Awesome Bio Agent Skills

A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

2,014+ deduplicated skills from 21 open-source repositories, organized into 15 categories. Each skill is a self-contained SKILL.md folder compatible with Claude-based agent frameworks (OpenClaw, NanoClaw, Biomni).

Genomics
Proteomics
Single-Cell Analysis
Biology and AI
Clinical and Medical
Transcriptomics
Database Query
Multi-Omics Integration
Bioinformatics Utilities
Visualization
Workflow Orchestration
Epigenomics
Pathway Analysis
Metagenomics
Protein Design
Sources

Genomics

472 skills — WGS/WES analysis, variant annotation, GWAS, CNV, structural variants, haplotype phasing, genome assembly.

View all 472 skills

Skill	Source	Description
alignment-and-mapping	bioclaw_hub	Workflow for read alignment, sorting, indexing, mapping statistics, and downstream-ready alignment artifacts.
bam-processing	bioskills	BAM file processing including sorting, indexing, duplicate marking, and quality filtering.
bcftools-variant-filtering	bioskills	Variant filtering and manipulation using BCFtools with customizable quality thresholds.
chip-seq-analysis	bioskills	ChIP-seq peak calling, quality control, and downstream enrichment analysis.
cnv-analysis	bioskills	Copy number variation detection and visualization from WGS or array data.
copy-number-variation	bioclaw_hub	CNV calling from sequencing data with segmentation and annotation.
de-novo-assembly	bioskills	De novo genome assembly using short or long reads with quality assessment.
deepvariant-calling	bioskills	Deep learning-based variant calling using DeepVariant for SNPs and indels.
exome-sequencing-analysis	bioskills	End-to-end whole exome sequencing analysis from raw reads to annotated variants.
fastq-quality-control	bioskills	FASTQ quality assessment and trimming using FastQC and Trimmomatic.
gatk-variant-calling	bioskills	GATK best-practices variant calling pipeline for germline SNPs and indels.
genome-annotation	bioskills	Structural and functional genome annotation using Prokka, AUGUSTUS, or MAKER.
genome-assembly-qc	bioskills	Assembly quality assessment with QUAST, BUSCO, and N50 statistics.
genome-browser-visualization	bioskills	Genome track visualization using IGV, UCSC Genome Browser, or JBrowse.
genome-comparison	bioskills	Whole-genome alignment and synteny analysis between species or strains.
genome-indexing	bioskills	Reference genome indexing for alignment tools including BWA, Bowtie2, and STAR.
genotype-imputation	bioskills	Genotype imputation using reference panels with IMPUTE2 or Beagle.
gwas-analysis	bioskills	Genome-wide association study analysis including QC, association testing, and Manhattan plots.
gwas-pipeline	clawbio	End-to-end GWAS pipeline with population stratification correction and fine-mapping.
haplotype-phasing	bioskills	Haplotype phasing from sequencing data using SHAPEIT or WhatsHap.
indel-calling	bioskills	Insertion and deletion variant calling with filtering and annotation.
long-read-assembly	bioskills	Genome assembly from PacBio or Oxford Nanopore long reads using Flye or Canu.
long-read-variant-calling	bioskills	Variant calling from long-read sequencing data using Clair3 or Medaka.
mendelian-randomization	sciagent	Two-sample Mendelian randomization analysis for causal inference between traits.
mitochondrial-variant-calling	bioskills	Mitochondrial genome variant calling with haplogroup assignment.
pangenome-analysis	bioskills	Pangenome construction and core/accessory genome analysis.
pharmacogenomics	bioskills	Pharmacogenomic variant interpretation for drug response prediction.
polygenic-risk-score	bioskills	Polygenic risk score calculation and validation using PLINK or PRSice.
population-genetics	bioskills	Population structure analysis, FST calculation, and demographic inference.
read-trimming	bioskills	Adapter trimming and quality filtering for Illumina sequencing reads.
repeat-masking	bioskills	Repetitive element identification and masking using RepeatMasker.
short-read-alignment	bioskills	Short-read alignment to reference genomes using BWA-MEM or Bowtie2.
snp-annotation	bioskills	SNP functional annotation using ANNOVAR, VEP, or SnpEff.
somatic-variant-calling	bioskills	Somatic mutation calling from tumor-normal pairs using Mutect2 or Strelka2.
structural-variant-calling	bioskills	Structural variant detection including deletions, inversions, and translocations.
structural-variant-detection	bioclaw_hub	SV detection from short and long reads with annotation and visualization.
variant-annotation	bioskills	Comprehensive variant annotation with functional impact prediction.
variant-filtering	bioskills	VCF variant filtering by quality, depth, allele frequency, and functional impact.
variant-prioritization	bioskills	Disease-relevant variant prioritization using CADD, REVEL, or ClinVar scores.
vcf-processing	bioskills	VCF file manipulation, merging, splitting, and format conversion.
wes-analysis	bioskills	Whole exome sequencing analysis pipeline from FASTQ to annotated variants.
wgs-analysis	bioskills	Whole genome sequencing analysis pipeline with GATK best practices.
wgs-pipeline	clawbio	Production-grade WGS pipeline with QC, alignment, variant calling, and reporting.

...and 429 additional genomics skills in the skills/bioskills/, skills/sciagent/, and skills/openclaw/ directories.

Proteomics

146 skills — mass spectrometry analysis, structure prediction, protein design, binding affinity optimization.

View all 146 skills

Skill	Source	Description
alphafold	adaptyv	AlphaFold2 structure prediction for single chains and multimers.
alphafold2-multimer	bioclaw_hub	Multimeric protein structure prediction using AlphaFold2-Multimer.
de-novo-protein-design	bioskills	De novo protein design using RFDiffusion and ProteinMPNN.
differential-protein-expression	bioskills	Differential protein expression analysis from mass spectrometry data using limma.
foldseek	adaptyv	Fast protein structure search against large databases using Foldseek.
mass-spectrometry-analysis	bioskills	Proteomics data analysis from raw MS spectra to protein quantification.
pdb	adaptyv	Protein Data Bank query and structure retrieval for analysis.
protein-binding-prediction	bioskills	Protein-protein and protein-ligand binding affinity prediction.
protein-design-workflow	adaptyv	End-to-end protein design workflow from target specification to candidate ranking.
protein-expression-analysis	bioskills	Protein expression quantification and normalization from MS data.
protein-function-prediction	bioskills	Protein function annotation using sequence and structure-based methods.
protein-interaction-network	bioskills	Protein-protein interaction network construction and hub gene identification.
protein-qc	adaptyv	Protein design candidate quality control with structural validation metrics.
protein-structure-analysis	bioskills	Protein structure analysis including secondary structure, domains, and active sites.
protein-structure-prediction	bioskills	Structure prediction using ESMFold, RoseTTAFold, or AlphaFold2.
proteinmpnn	adaptyv	Sequence design for fixed protein backbones using ProteinMPNN.
proteomics-database-search	bioskills	Peptide identification by database search using Mascot, Sequest, or MaxQuant.
proteomics-quantification	bioskills	Label-free and TMT-based protein quantification from mass spectrometry data.
uniprot	adaptyv	UniProt protein database query for sequence, function, and annotation retrieval.

...and 127 additional proteomics skills in the skills/bioskills/ and skills/openclaw/ directories.

Single-Cell Analysis

117 skills — preprocessing, clustering, cell type annotation, trajectory inference, cell communication, multimodal integration.

View all 117 skills

Skill	Source	Description
cell-cell-communication	bioskills	Cell-cell communication inference using CellChat or NicheNet.
cell-clustering	bioskills	Single-cell clustering using Leiden or Louvain algorithms with resolution tuning.
cell-type-annotation	bioskills	Automated and manual cell type annotation using marker genes and reference datasets.
cellranger-pipeline	bioskills	10x Genomics Cell Ranger pipeline for FASTQ to count matrix generation.
crispr-screen-analysis	bioskills	Pooled CRISPR screen analysis with MAGeCK for essential gene identification.
doublet-detection	bioskills	Doublet detection and removal using Scrublet or DoubletFinder.
multimodal-integration	bioskills	Single-cell multimodal data integration using WNN or MOFA+.
pseudotime-analysis	bioskills	Pseudotime trajectory inference using Monocle3 or Slingshot.
rna-velocity	bioskills	RNA velocity analysis using scVelo for cell fate prediction.
scanpy-analysis	omics	Single-cell RNA-seq analysis using Scanpy from QC to UMAP visualization.
scrna-batch-correction	bioskills	Batch effect correction for scRNA-seq using Harmony, BBKNN, or Scanorama.
scrna-clustering	clawbio	Single-cell clustering workflow with marker gene identification and annotation.
scrna-differential-expression	bioskills	Differential gene expression between cell clusters using Wilcoxon or DESeq2.
scrna-preprocessing	bioskills	Single-cell RNA-seq preprocessing including QC filtering, normalization, and feature selection.
scrna-qc	bioskills	Single-cell RNA-seq quality control with mitochondrial fraction and count filtering.
seurat-analysis	bioskills	Complete scRNA-seq analysis using Seurat from raw counts to cell type annotation.
spatial-transcriptomics	omics	Spatial transcriptomics analysis for 10x Visium data with spatially variable gene detection.
trajectory-inference	clawbio	Cell differentiation trajectory inference with pseudotime ordering and branch analysis.

...and 99 additional single-cell skills in the skills/bioskills/, skills/omics/, and skills/openclaw/ directories.

Biology and AI

117 skills — medical AI, clinical decision support, drug discovery, general biological tools.

View all 117 skills

Skill	Source	Description
bindcraft	adaptyv	Binder design using BindCraft for therapeutic protein engineering.
binder-design	adaptyv	Protein binder design targeting specific epitopes using diffusion-based methods.
binding-characterization	adaptyv	Experimental binding characterization workflow for designed protein candidates.
boltz	adaptyv	Biomolecular structure prediction using the Boltz model.
boltzgen	adaptyv	Generative structure sampling using BoltzGen for diverse conformation exploration.
campaign-manager	adaptyv	Protein design campaign management for iterative experimental cycles.
chai	adaptyv	Biomolecular complex structure prediction using the Chai-1 model.
drug-discovery-pipeline	bioskills	AI-driven drug discovery pipeline from target identification to lead optimization.
drug-interaction-prediction	bioskills	Drug-drug and drug-target interaction prediction using machine learning.
drug-repurposing	bioskills	Drug repurposing analysis using transcriptomic signatures and network pharmacology.
esm	adaptyv	Protein language model embeddings using ESM2 for sequence analysis.
ipsae	adaptyv	Interface predicted aligned error analysis for protein complex quality assessment.
molecular-docking	bioskills	Small molecule docking using AutoDock Vina or Glide.
setup	adaptyv	Environment setup and configuration for protein design workflows.
target-identification	bioskills	Drug target identification using genetic evidence and network analysis.
virtual-screening	bioskills	Virtual screening of compound libraries against protein targets.

...and 101 additional biology and AI skills in the skills/openclaw/ and skills/sciagent/ directories.

Clinical and Medical

97 skills — EHR analysis, clinical trial design, drug interactions, precision medicine, adverse event detection.

View all 97 skills

Skill	Source	Description
adverse-event-detection	bioskills	Adverse drug event detection from clinical notes using NLP.
clinical-nlp	sciagent	Clinical text processing for entity extraction and relation identification.
clinical-trial-design	sciagent	Clinical trial design with power analysis, randomization, and endpoint selection.
clinical-trial-search	sciagent	ClinicalTrials.gov search and eligibility criteria extraction.
comorbidity-analysis	bioskills	Disease comorbidity analysis from EHR data using ICD codes.
drug-dosing-optimization	bioskills	Pharmacokinetic modeling for personalized drug dosing.
ehr-analysis	bioclaw_hub	Electronic health record analysis for patient cohort characterization.
icd-coding	sciagent	Automated ICD-10 code assignment from clinical text.
patient-stratification	bioskills	Patient subgroup identification using clinical and molecular features.
precision-medicine	bioskills	Precision medicine workflow integrating genomic and clinical data for treatment selection.
survival-analysis	sciagent	Kaplan-Meier and Cox proportional hazards survival analysis.

...and 86 additional clinical skills in the skills/openclaw/ and skills/sciagent/ directories.

Transcriptomics

87 skills — RNA-seq full pipeline, differential expression, alternative splicing, lncRNA, small RNA.

View all 87 skills

Skill	Source	Description
alternative-splicing	bioskills	Alternative splicing analysis using rMATS or SUPPA2.
bulk-rna-seq	bioskills	Bulk RNA-seq analysis from raw reads to differential expression.
cell-free-expression	adaptyv	Cell-free protein expression system analysis and optimization.
deseq2-analysis	bioskills	Differential expression analysis using DESeq2 with shrinkage estimation.
edger-analysis	bioskills	Differential expression analysis using edgeR for count data.
gene-expression-normalization	bioskills	RNA-seq count normalization using TPM, RPKM, or TMM methods.
hisat2-alignment	bioskills	Splice-aware RNA-seq alignment using HISAT2.
kallisto-quantification	bioskills	Transcript quantification using Kallisto pseudoalignment.
lncrna-analysis	bioskills	Long non-coding RNA identification, expression, and functional analysis.
mirna-analysis	bioskills	MicroRNA expression profiling and target prediction.
rna-seq-pipeline	clawbio	End-to-end RNA-seq pipeline with alignment, quantification, and QC.
salmon-quantification	bioskills	Transcript-level quantification using Salmon with bias correction.
star-alignment	bioskills	High-speed RNA-seq alignment using STAR with splice junction detection.
stringtie-assembly	bioskills	Transcript assembly and quantification using StringTie.
wgcna-analysis	bioskills	Weighted gene co-expression network analysis for module identification.

...and 72 additional transcriptomics skills in the skills/bioskills/ and skills/openclaw/ directories.

Database Query

54 skills — UniProt, PDB, KEGG, Reactome, GEO, ClinVar, Ensembl, STRING.

View all 54 skills

Skill	Source	Description
clinvar-query	bioskills	ClinVar variant pathogenicity query and clinical significance retrieval.
ensembl-query	bioskills	Ensembl gene, transcript, and variant annotation retrieval via REST API.
geo-data-retrieval	sragent	GEO and SRA dataset search, metadata extraction, and download.
kegg-pathway-query	bioskills	KEGG pathway and gene annotation query for functional analysis.
omim-query	bioskills	OMIM disease-gene association query for Mendelian disorder analysis.
pdb-structure-query	bioskills	Protein Data Bank structure search and coordinate retrieval.
pubmed-search	sciagent	PubMed literature search with MeSH terms and citation retrieval.
reactome-query	bioskills	Reactome pathway database query for biological process annotation.
string-interaction-query	bioskills	STRING protein interaction network query with confidence scoring.
uniprot-query	bioskills	UniProt protein sequence, function, and domain annotation retrieval.

...and 44 additional database query skills in the skills/bioskills/, skills/bioclaw/, and skills/sciagent/ directories.

Multi-Omics Integration

51 skills — MOFA, DIABLO, single-cell multimodal, spatial transcriptomics.

View all 51 skills

Skill	Source	Description
diablo-integration	bioskills	Multi-omics supervised integration using DIABLO for biomarker discovery.
mofa-integration	bioskills	Multi-omics factor analysis using MOFA+ for latent factor decomposition.
multi-omics-clustering	bioskills	Multi-omics data clustering using similarity network fusion.
multi-omics-pipeline	clawbio	Integrated multi-omics analysis pipeline combining genomics, transcriptomics, and proteomics.
multimodal-scrna	omics	Single-cell multimodal integration of RNA and ATAC data using ArchR or Seurat.
proteogenomics	bioskills	Proteogenomics integration linking genomic variants to protein expression changes.
spatial-multi-omics	omics	Spatial multi-omics data integration for tissue-resolved molecular profiling.

...and 44 additional multi-omics skills in the skills/bioskills/ and skills/openclaw/ directories.

Bioinformatics Utilities

50 skills — sequence analysis, BLAST, tool chains, pipeline management.

View all 50 skills

Skill	Source	Description
bio-analysis-skills-hub	bioclaw	Browse and install community skills from the BioClaw Skills Hub.
blast-search	bioskills	Sequence similarity search using BLAST against NCBI or custom databases.
conda-environment	kdense	Conda environment creation and package management for bioinformatics tools.
docker-container	kdense	Docker container setup and management for reproducible bioinformatics workflows.
file-format-conversion	bioskills	Bioinformatics file format conversion between FASTQ, BAM, VCF, BED, and GFF.
multiple-sequence-alignment	bioskills	Multiple sequence alignment using MUSCLE, MAFFT, or ClustalW.
nextflow-pipeline	bioskills	Nextflow pipeline development and execution for scalable bioinformatics workflows.
phylogenetic-analysis	bioskills	Phylogenetic tree construction using maximum likelihood or Bayesian methods.
primer-design	bioskills	PCR primer design with Tm calculation and specificity checking.
sequence-analysis	bioskills	General sequence analysis including ORF finding, GC content, and motif search.
snakemake-workflow	bioskills	Snakemake workflow development with rule-based dependency management.

...and 39 additional bioinformatics utility skills in the skills/kdense/ and skills/bioclaw/ directories.

Visualization

38 skills — volcano plots, heatmaps, PCA/UMAP, interactive charts.

View all 38 skills

Skill	Source	Description
circos-plot	bioskills	Circular genome visualization using Circos for comparative genomics.
gene-expression-heatmap	bioskills	Gene expression heatmap with hierarchical clustering and annotation.
genome-visualization	bioskills	Genome-scale data visualization including coverage tracks and variant plots.
interactive-plots	kdense	Interactive scientific visualization using Plotly or Bokeh.
pca-analysis	bioskills	Principal component analysis for dimensionality reduction and sample clustering.
umap-visualization	bioskills	UMAP dimensionality reduction for high-dimensional biological data visualization.
volcano-plot	bioskills	Volcano plot generation for differential expression result visualization.

...and 31 additional visualization skills in the skills/bioskills/ and skills/kdense/ directories.

Workflow Orchestration

31 skills — Snakemake, Nextflow, CWL, WDL.

View all 31 skills

Skill	Source	Description
cwl-workflow	bioskills	Common Workflow Language pipeline development for portable bioinformatics workflows.
galaxy-workflow	bioskills	Galaxy platform workflow design and execution for reproducible analysis.
hpc-job-submission	kdense	HPC cluster job submission using SLURM or PBS for large-scale computation.
nextflow-dsl2	bioskills	Nextflow DSL2 pipeline development with module reuse and containerization.
pipeline-monitoring	kdense	Bioinformatics pipeline monitoring, logging, and failure recovery.
snakemake-cluster	bioskills	Snakemake cluster execution with SLURM integration and resource management.
wdl-workflow	bioskills	Workflow Description Language pipeline for cloud and HPC execution.

...and 24 additional workflow orchestration skills in the skills/bioskills/ and skills/kdense/ directories.

Epigenomics

19 skills — ChIP-seq, ATAC-seq, DNA methylation, Hi-C, chromatin state.

View all 19 skills

Skill	Source	Description
atac-seq	bioclaw	ATAC-seq processing with QC, MACS3 peak calling, consensus peak matrices, and differential accessibility.
bisulfite-sequencing	bioskills	Whole-genome bisulfite sequencing analysis for DNA methylation profiling.
chip-seq-peak-calling	bioskills	ChIP-seq peak calling using MACS2 with IDR reproducibility assessment.
chromatin-state-annotation	bioskills	Chromatin state annotation using ChromHMM or Segway.
dna-methylation-analysis	bioskills	DNA methylation analysis from WGBS or RRBS data with DMR identification.
hic-analysis	bioskills	Hi-C chromatin conformation analysis with TAD calling and loop detection.
motif-analysis	bioskills	Transcription factor motif enrichment analysis in peak regions.

...and 12 additional epigenomics skills in the skills/bioskills/ and skills/bioclaw_hub/ directories.

Pathway Analysis

13 skills — KEGG, Reactome, GO, GSEA.

Skill	Source	Description
gene-ontology-analysis	bioskills	Gene Ontology enrichment analysis using clusterProfiler or topGO.
gsea-analysis	bioskills	Gene Set Enrichment Analysis using GSEA or fgsea with MSigDB gene sets.
kegg-enrichment	bioskills	KEGG pathway enrichment analysis for differentially expressed genes.
network-enrichment	bioskills	Network-based pathway enrichment using STRING or BioGRID interactions.
pathway-visualization	bioskills	Pathway diagram visualization using Pathview or ReactomePA.
reactome-enrichment	bioskills	Reactome pathway enrichment analysis with hierarchical pathway mapping.
upstream-regulator-analysis	bioskills	Upstream transcription factor regulator analysis from differential expression data.

...and 6 additional pathway analysis skills in the skills/bioskills/ directory.

Metagenomics

8 skills — 16S/ITS amplicon, Kraken2, MetaPhlAn, QIIME2.

Skill	Source	Description
16s-amplicon-analysis	bioskills	16S rRNA amplicon sequencing analysis using QIIME2 or DADA2.
its-fungal-analysis	bioskills	ITS amplicon sequencing analysis for fungal community profiling.
kraken2-classification	bioskills	Metagenomic read classification using Kraken2 with Bracken abundance estimation.
metaphlan-profiling	bioskills	Metagenomic species profiling using MetaPhlAn4.
metagenome-assembly	bioskills	Metagenomic assembly using MEGAHIT or metaSPAdes.
microbiome-diversity	bioskills	Alpha and beta diversity analysis for microbiome studies.
qiime2-pipeline	bioskills	QIIME2 amplicon sequencing pipeline from raw reads to diversity analysis.
shotgun-metagenomics	bioskills	Shotgun metagenomics analysis including assembly, binning, and annotation.

Protein Design

6 skills — RFDiffusion, ProteinMPNN, Boltz, Chai, LigandMPNN.

Skill	Source	Description
ligandmpnn	adaptyv	Sequence design for protein-ligand complexes using LigandMPNN.
protein-design-de-novo	bioskills	De novo protein backbone generation using RFDiffusion.
proteinmpnn-design	adaptyv	Fixed-backbone sequence design using ProteinMPNN with temperature sampling.
rfdiffusion	adaptyv	Protein backbone diffusion using RFDiffusion for binder and motif scaffolding.
solublempnn	adaptyv	Solubility-optimized sequence design using SolubleMPNN.
structure-based-design	bioskills	Structure-based protein engineering using computational mutagenesis and docking.

Sources

This collection aggregates and deduplicates skills from the following open-source repositories:

Repository	Skills	Focus
GPTomics/bioSkills	524	Systematic bioinformatics suite from QC to multi-omics.
FreedomIntelligence/OpenClaw-Medical-Skills	326	Medical AI library aggregating 12 specialized sub-repositories.
wu-yc/LabClaw	206	206 agentic skills for lab automation and biomedical research. Stanford-Princeton AI Co-Scientists.
sunricLogic/MedgeClaw	140	140 K-Dense scientific skills for biomedicine with real-time dashboard, RStudio, and JupyterLab.
jaechang-hits/SciAgent-Skills	151	Scientific agent skills for statistics, databases, and clinical decisions.
K-Dense-AI/scientific-agent-skills	91	General scientific computing and HPC workflow skills.
variomeanalytics/bioinformatics-agent-skills	78	78 bioinformatics workflow skills via MCP server knowledge graph for Claude Code.
TianGzlab/OmicsClaw	72	72 skills across 6 omics domains: spatial, scRNA-seq, bulk RNA-seq, genomics, proteomics, metabolomics.
ClawBio/ClawBio	60	Bioinformatics workflow orchestration for GWAS and single-cell.
QSong-github/DrugClaw	57	57 drug intelligence skills: DTI, ADR, DDI, pharmacogenomics, repurposing. LangGraph-powered.
ChrisLou-bioinfo/nobel-medicine-minds	52	Cognitive frameworks of 52 Nobel Medicine laureates (2004–2025) as runnable SKILL.md files.
zongtingwei/Bioclaw_Skills_Hub	46	Ten-category biological skills hub.
Runchuan-BU/BioClaw	37	Core bioinformatics tools and database query skills.
fmschulz/omics-skills	29	Single-cell and spatial omics specialized skills.
adaptyvbio/protein-design-skills	21	Full protein design toolkit: RFDiffusion, ProteinMPNN, Boltz, Chai.
HC-Guo/HealthClaw	10	Self-evolving personal health copilot: medical consultation, wearable analytics, omics evidence.
CUHK-AIM-Group/NeuroClaw	30	Neuroimaging skills: sMRI, fMRI, dMRI, EEG with BIDS, FreeSurfer, FSL, fMRIPrep. CUHK AIM Group.
aristoteleo/PantheonOS	50	1,000+ agents/teams/skills for single-cell and spatial transcriptomics. Dynamo/Spateo team.
EvoScientist/EvoSkills	13	13 research-lifecycle skills: ideation, paper planning, experiment execution, writing, and review.
zamushwani2/biomedical-ai-skills	4	Cancer multi-omics analysis skills in R.
ArcInstitute/SRAgent	1	Intelligent SRA and GEO dataset retrieval.

Skill Format

Each skill is a self-contained folder with a SKILL.md file defining domain knowledge, tool usage, and expected outputs. Compatible with any Claude-based agent framework supporting the SKILL.md convention.

skills/
└── <source>/
    └── <skill-name>/
        ├── SKILL.md          # Skill definition (required)
        └── ...               # Supporting files

Quick install:

git clone https://github.com/BioTender-max/awesome-bio-agent-skills.git
cp -r awesome-bio-agent-skills/skills/* /path/to/your/agent/skills/

A machine-readable index of all 1,306 skills is available in bioskill_index_v2.csv.

awesome-bio-agent-skills